Information for 8-CTGDGGAACTAAACCA (Motif 12)

A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G A C G T C G A T C G A T C G T A A C T G A C G T A C G T A G T C A G T C G A T C A G T C C T G A A T C G
p-value:1e-9
log p-value:-2.222e+01
Information Content per bp:1.764
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.2 +/- 21.1bp
Average Position of motif in Background66.9 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA
----GGCCATAAATCA
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA
-------CTTAATCCC
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.52
Offset:9
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA-
---------TAATCCCN
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA-
----GGCCATAAATCAC
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.51
Offset:7
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA
-------GCTAATCC-
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA
-TGGGGA---------
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A
A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CTGDGGAACTAAACCA
TTAAGAGGAAGTTA----
 A C G T A C G T A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA
----GGCCATAAATCA
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A
A C G T A C G T A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA-
-CTTGGCANNNTGCCAA
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.50
Offset:8
Orientation:forward strand
Alignment:CTGDGGAACTAAACCA
--------TTAATCCC
 A T G C A G C T A C T G C A T G C T A G A C T G G T C A G T C A G T A C A C G T C G T A C G T A G T C A A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C