Information for 4-GCCADCVCCAVCAGGT (Motif 4)

C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T
Reverse Opposite:
C T G A A G T C A G T C A G C T A C T G A C T G A C G T A C T G A C T G A C T G C T A G G A C T A C G T A C T G C A T G A G T C
p-value:1e-9
log p-value:-2.247e+01
Information Content per bp:1.782
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 14.5bp
Average Position of motif in Background58.6 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT1/MA0743.1/Jaspar

Match Rank:1
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCCADCVCCAVCAGGT----
-----GAGCAACAGGTGGTT
 C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

SCRT2/MA0744.1/Jaspar

Match Rank:2
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCCADCVCCAVCAGGT--
-----ATGCAACAGGTGG
 C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GCCADCVCCAVCAGGT--
------CACAGCAGGGGG
 C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GCCADCVCCAVCAGGT
------GCCATCTGTT
 C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCADCVCCAVCAGGT
GCCACRCCCACY----
 C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T
T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCADCVCCAVCAGGT
GCCACACCCA------
 C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCADCVCCAVCAGGT
AGCAACAGCCGCACC----
 A C G T A C G T A C G T C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GCCADCVCCAVCAGGT-
-------CCAGCTGTTN
 C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.54
Offset:10
Orientation:forward strand
Alignment:GCCADCVCCAVCAGGT----
----------VCAGGTRDRY
 C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCCADCVCCAVCAGGT
TGCCAAAATAAACANN-
 A C G T C T A G G T A C A G T C C G T A C G T A A G T C T A G C A G T C A G T C C G T A T A G C A G T C C T G A A C T G C T A G A G C T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A A C G T