Information for 4-CTCAGCCAGTCAA (Motif 16)

A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C T G C G T A A C T G
p-value:1e-7
log p-value:-1.626e+01
Information Content per bp:1.940
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 26.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCAGCCAGTCAA
ACTAGCCAATCA-
 A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTCAGCCAGTCAA-
---AGCCACTCAAG
 A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A A C G T
A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTCAGCCAGTCAA-----
-CGACCCAATCAACGGTG
 A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTCAGCCAGTCAA
AAATGGACCAATCAG
 A C G T A C G T A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CTCAGCCAGTCAA
-----GCTGTCAA
 A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTCAGCCAGTCAA
-SCTGTCAVTCAV
 A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTCAGCCAGTCAA----
CAAATCCAGACATCACA
 A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTCAGCCAGTCAA
---MRSCACTYAA
 A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCCAGTCAA
DCTCAGCAGG----
 A C G T A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CTCAGCCAGTCAA
-----CCAATCAA
 A G T C A C G T A G T C C G T A C T A G A G T C A G T C C G T A A C T G A C G T A G T C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A