Information for 2-CAGGCTGGCCAGGCTC (Motif 3)

A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
Reverse Opposite:
A T C G C G T A A T C G A G T C A G T C A C G T A C T G A T C G A G T C G T A C C G T A A C T G A G T C A G T C A C G T A C T G
p-value:1e-13
log p-value:-3.168e+01
Information Content per bp:1.845
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.7 +/- 19.8bp
Average Position of motif in Background66.7 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:1
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGGCTGGCCAGGCTC
GGGGCTYGKCTGGGA-
 A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCTGGCCAGGCTC
SCAGYCADGCATGAC--
 A C G T A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CAGGCTGGCCAGGCTC
-WDNCTGGGCA-----
 A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CAGGCTGGCCAGGCTC
AAGGKGRCGCAGGCA-
 A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CAGGCTGGCCAGGCTC-
--GYCTGGYYTNTGTCA
 A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C A C G T
A C G T A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.48
Offset:5
Orientation:forward strand
Alignment:CAGGCTGGCCAGGCTC
-----TTGCCAAG---
 A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Klf12/MA0742.1/Jaspar

Match Rank:7
Score:0.48
Offset:6
Orientation:forward strand
Alignment:CAGGCTGGCCAGGCTC-----
------GACCACGCCCTTATT
 A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.47
Offset:4
Orientation:forward strand
Alignment:CAGGCTGGCCAGGCTC
----CGTGCCAAG---
 A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.47
Offset:-5
Orientation:forward strand
Alignment:-----CAGGCTGGCCAGGCTC
AGCAACAGCCGCACC------
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.47
Offset:6
Orientation:reverse strand
Alignment:CAGGCTGGCCAGGCTC
------TGCCAA----
 A G T C G T C A A C T G A C T G A G T C G A C T A C T G A C T G A T G C G T A C C G T A C T A G A C T G A T G C G C A T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T