Information for 6-CCASTMAADG (Motif 27)

T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
Reverse Opposite:
A G T C G T C A A C G T A C G T A C T G C G T A A T C G A C G T A T C G A T C G
p-value:1e-2
log p-value:-6.833e+00
Information Content per bp:1.762
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.11%
Number of Background Sequences with motif702.8
Percentage of Background Sequences with motif1.45%
Average Position of motif in Targets48.9 +/- 24.5bp
Average Position of motif in Background50.8 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CCASTMAADG
NSCACTYVAV-
 A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCASTMAADG
AGCCACTCAAG-
 A C G T A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCASTMAADG
AASCACTCAA--
 A C G T A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCASTMAADG
MRSCACTYAA--
 A C G T A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCASTMAADG
RSCACTYRAG-
 A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCASTMAADG
CCACTTGAA-
 T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CCASTMAADG--
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCASTMAADG
ACCACTTGAA-
 A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCASTMAADG
ACCACTTAA--
 A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCASTMAADG
ACCACTTAA--
 A C G T T A G C A T G C C G T A A T G C A C G T G T A C T G C A C G T A C A G T A C T G
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T