Information for 4-AAGGKACAWTTGY (Motif 10)

G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T
Reverse Opposite:
C T A G A G T C C G T A C G T A C G T A A C G T A C T G C G A T T G A C A G T C A T G C A C G T A C G T
p-value:1e-10
log p-value:-2.403e+01
Information Content per bp:1.886
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.3 +/- 31.1bp
Average Position of motif in Background51.4 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AAGGKACAWTTGY--
NNNNNGAACAATTGANN
 A C G T A C G T G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGGKACAWTTGY---
AATGAACAATGGAATT
 G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0047.1_Myf6_1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGGKACAWTTGY---
GAAGAACAGGTGTCCG
 G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T A C G T A C G T A C G T
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGGKACAWTTGY--
TCACGGAACAATAGGTG
 A C G T A C G T G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAGGKACAWTTGY
CCAGGAACAG----
 A C G T G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGGKACAWTTGY
-AGGVNCCTTTGT
 G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AAGGKACAWTTGY
---GAACAATGG-
 G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAGGKACAWTTGY
--RNAACAATGG-
 G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T
A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAGGKACAWTTGY------
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AAGGKACAWTTGY
---RAACAATGGN
 G T C A C G T A A T C G A C T G A C T G C G T A A G T C C G T A C G A T A C G T A C G T A C T G G A C T
A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C