Information for 3-CATCATGCTTGAT (Motif 7)

A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T
Reverse Opposite:
G C T A A C G T G T A C G T C A C G T A A C T G A T G C C G T A C G A T A C T G C G T A C G A T A C T G
p-value:1e-11
log p-value:-2.670e+01
Information Content per bp:1.920
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif20.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.8 +/- 14.4bp
Average Position of motif in Background44.3 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0144.1_Lef1_2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CATCATGCTTGAT----
-NNANTGATTGATNTTN
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CATCATGCTTGAT----
CGTCACGCATGACTGCA
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CATCATGCTTGAT--
---TTTGATTGATGN
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CATCATGCTTGAT----
-NNANTGATTGATNNNN
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T A C G T A C G T A C G T A C G T
A C G T G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CATCATGCTTGAT---
----ATGATKGATGRC
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Pax6/MA0069.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CATCATGCTTGAT--
-TTCACGCATGAGTT
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T A C G T A C G T
A C G T A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX9/MA0781.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CATCATGCTTGAT----
CGTCACGCATGACTGCA
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CATCATGCTTGAT--
-----TGATTGATGA
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CATCATGCTTGAT
---CAAGCTT---
 A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CATCATGCTTGAT
ATGCATWATGCATRW-
 A C G T A C G T A C G T A G T C C G T A C G A T A G T C C G T A A C G T A T C G G T A C A C G T A C G T A C T G C G T A C G A T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T A C G T