Information for 13-GGCAGGCAGGCAG (Motif 27)

A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A G T C C A G T A C T G A G T C A G T C
p-value:1e-6
log p-value:-1.534e+01
Information Content per bp:1.928
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.6 +/- 7.4bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCAGGCAG
TGGCAGNCTGCCAG
 A C G T A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGGCAG---
-SCAGYCADGCATGAC
 A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCAGGCAGGCAG
AGGTGNCAGACAG
 A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCAGGCAGGCAG-----
GGAAGGAAGGAAGGAAGG
 A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGGCAG
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCAGGCAGGCAG
GGTTGGCAT----
 A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGGCAGGCAG-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCAGGCAGGCAG
GSCTGTCACTCA-
 A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGCAGGCAGGCAG
---TBGCACGCAA
 A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGCAGGCAGGCAG
--AAGGCAAGTGT
 A C T G A C T G A G T C G C T A A C T G A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C T G
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T