Information for 17-CCYTKGCATCCAA (Motif 28)

A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C T G C G T A A C G T A C T G G T A C G T A C C G T A C T A G A C T G C T A G
p-value:1e-7
log p-value:-1.730e+01
Information Content per bp:1.872
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 12.9bp
Average Position of motif in Background60.6 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCYTKGCATCCAA---
-ATTTGCATACAATGG
 A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A A C G T A C G T A C G T
A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Pou2f3/MA0627.1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCYTKGCATCCAA
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCYTKGCATCCAA
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCYTKGCATCCAA
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CCYTKGCATCCAA----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCYTKGCATCCAA
TNTAATTTGCATANNN
 A C G T A C G T A C G T A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

PB0098.1_Zfp410_1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCYTKGCATCCAA-----
-NNNTCCATCCCATAANN
 A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCYTKGCATCCAA
BTVATTWGCATA---
 A C G T A C G T A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCYTKGCATCCAA
-CTTGGCAA----
 A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCYTKGCATCCAA
NNTTGGCANN---
 A G T C A G T C A G C T A C G T A C G T A C T G A G T C C G T A A C G T G T A C A G T C C G T A C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T