Information for 7-RCWATACAGGWYA (Motif 6)

C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A
Reverse Opposite:
A C G T C T A G C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C G T C G A T A C T G A G C T
p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.6 +/- 24.7bp
Average Position of motif in Background35.4 +/- 11.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:RCWATACAGGWYA
---ATCAAGGTCA
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A
A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.61
Offset:5
Orientation:forward strand
Alignment:RCWATACAGGWYA
-----TRAGGTCA
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RCWATACAGGWYA-
CATACAATACGAAATAA
 A C G T A C G T A C G T C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:RCWATACAGGWYA
---AAYTAGGTCA
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.58
Offset:7
Orientation:forward strand
Alignment:RCWATACAGGWYA
-------AGGTCA
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:RCWATACAGGWYA
----CACAGN---
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RCWATACAGGWYA
-ANGNAAAGGTCA
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RCWATACAGGWYA----
AATATACATGTAAAACA
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RCWATACAGGWYA--
-----VCAGGTRDRY
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RCWATACAGGWYA----
-TCTCAAAGGTCACGAG
 C T G A G T A C C G T A C G T A C G A T C G T A A G T C C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G