Information for 13-ACGDCCCTGACCT (Motif 16)

C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T
Reverse Opposite:
C G T A C T A G C T A G A C G T A T G C G C T A A C T G A C T G A C T G G A C T A G T C A C T G C G A T
p-value:1e-8
log p-value:-1.980e+01
Information Content per bp:1.800
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.8 +/- 26.2bp
Average Position of motif in Background72.6 +/- 9.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ACGDCCCTGACCT
-TGACCTTGACCT
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ACGDCCCTGACCT
-TGACCTTGACCT
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:ACGDCCCTGACCT--
-------TGACCTYA
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:ACGDCCCTGACCT
-------TGACCT
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:ACGDCCCTGACCT----
-------TGACCTTGAT
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:ACGDCCCTGACCT--
-------TGACCYCT
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACGDCCCTGACCT
NAGGTCANTGACCT
 A C G T C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:ACGDCCCTGACCT---
------CTGACCTTTG
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:6
Orientation:forward strand
Alignment:ACGDCCCTGACCT---
------NTGACCTTGA
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:ACGDCCCTGACCT------
---NNNNTGACCTTTNNNN
 C G T A A G T C T C A G C G T A G T A C A G T C G T A C C A G T A T C G G T C A A G T C A G T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A