Information for 11-CCACTTGAGGDGT (Motif 11)

A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
Reverse Opposite:
C G T A A T G C G A T C A G T C A G T C A C G T G T A C G T C A C G T A A C T G A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.277e+01
Information Content per bp:1.825
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif31.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets43.5 +/- 23.0bp
Average Position of motif in Background47.4 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCACTTGAGGDGT
ACCACTTGAA----
 A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CCACTTGAGGDGT
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

NKX2-8/MA0673.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCACTTGAGGDGT
CCACTTGAA----
 A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCACTTGAGGDGT
NSCACTYVAV----
 A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCACTTGAGGDGT
RSCACTYRAG----
 A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCACTTGAGGDGT
CTTAACCACTTAAGGAT-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCACTTGAGGDGT
TAAGCCACTTGAATTT-
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCACTTGAGGDGT
TAAGCCACTTGAAATT-
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCACTTGAGGDGT
ATCCAC---------
 A C G T A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACTTGAGGDGT
MRSCACTYAA-----
 A C G T A C G T A G T C A G T C C G T A A G T C C G A T C A G T A C T G C G T A A C T G C T A G C A T G A T C G C G A T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T