Information for 17-YWACACWRTMARAGMR (Motif 33)

A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
Reverse Opposite:
G A T C A C T G A G T C A C G T A G T C A C G T A C G T C G T A A G C T C G A T A C T G A C G T A C T G A C G T C G A T C T A G
p-value:1e-9
log p-value:-2.206e+01
Information Content per bp:1.806
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 26.6bp
Average Position of motif in Background43.9 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:YWACACWRTMARAGMR
---GNCTATAAAAGG-
 A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-YWACACWRTMARAGMR
CTCACACAATGGCGC--
 A C G T A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:forward strand
Alignment:YWACACWRTMARAGMR-
CGACCCAATCAACGGTG
 A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:YWACACWRTMARAGMR
---GACAATGNN----
 A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---YWACACWRTMARAGMR
TCACGGAACAATAGGTG--
 A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:YWACACWRTMARAGMR-
-AACCCAATAAAATTCG
 A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G A C G T
A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:YWACACWRTMARAGMR
----GCAATAAAA---
 A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-YWACACWRTMARAGMR
GHTACAWTGTADCHR--
 A C G T A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
C T A G G T C A G C A T C G T A A T G C G C T A C G T A C G A T T C A G G C A T C G T A C G A T G T A C G C T A C T G A A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.50
Offset:3
Orientation:forward strand
Alignment:YWACACWRTMARAGMR
---NGCAATTAAA---
 A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:YWACACWRTMARAGMR
---CCYMATAAAA---
 A G T C C G T A C G T A A G T C C G T A A G T C G C T A C T G A A C G T G T C A G T C A C T A G C G T A A C T G G T A C C T A G
A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T