Information for 13-GGTTGNCAAGGTGCAG (Motif 22)

A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G
Reverse Opposite:
A G T C A C G T C T A G A G T C C G T A A T G C T A G C C G A T A C G T A C T G A G T C A G T C C G T A C T G A A G T C G T A C
p-value:1e-11
log p-value:-2.551e+01
Information Content per bp:1.740
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.4 +/- 28.2bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGTTGNCAAGGTGCAG
--TTGGCATGGTGCCA
 A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G
A C G T A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGTTGNCAAGGTGCAG
NGTAGGTTGGCATNNN----
 A C G T A C G T A C G T A C G T A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGNCAAGGTGCAG
NNCGTTGCTATGGNN---
 A C G T A C G T A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGTTGNCAAGGTGCAG
-GTTGCCATGGNAAC-
 A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GGTTGNCAAGGTGCAG-
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGTTGNCAAGGTGCAG
--TTGCCAAG------
 A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGTTGNCAAGGTGCAG---
--ATCCACAGGTGCGAAAA
 A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G A C G T A C G T A C G T
A C G T A C G T T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGTTGNCAAGGTGCAG
GGTTGGCAT-------
 A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GGTTGNCAAGGTGCAG
NNTTGGCANN------
 A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

SOX8/MA0868.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GGTTGNCAAGGTGCAG----
----AACAATGTGCAGTGTT
 A C T G C T A G A G C T A C G T T C A G A C T G G T A C C G T A G C T A A C T G T A C G A C G T A C T G A G T C T C G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A G T A C C T G A C G T A A C G T C T A G C G A T A C T G A G T C C G T A C A T G A C G T A C T G C G A T A G C T