Information for 9-AGACATGTTC (Motif 12)

C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C
Reverse Opposite:
T C A G G T C A C G T A T G A C C T G A G A C T A C T G C G A T A T G C G A C T
p-value:1e-13
log p-value:-3.045e+01
Information Content per bp:1.510
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif9.81%
Number of Background Sequences with motif1629.1
Percentage of Background Sequences with motif3.59%
Average Position of motif in Targets54.9 +/- 29.8bp
Average Position of motif in Background49.8 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------AGACATGTTC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGTTC
CCAGACRSVB--
 A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGTTC
CCAGACAG----
 A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PROX1/MA0794.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGACATGTTC
CAAGACGCCTTA
 A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C
A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGTTC
BCAGACWA----
 A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGACATGTTC----
NNNNNBAGATAWYATCTVHN
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C A C G T A C G T A C G T A C G T
C T G A C T G A C T A G T C G A C G T A A T G C C G T A A C T G C G T A A C G T C T G A C G A T A G C T C G T A A C G T A G T C C G A T T A C G G T C A G C A T

PH0086.1_Irx5/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGACATGTTC----
AATATACATGTAAAATT
 A C G T A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C A C G T A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGACATGTTC--
GACAGAGATATCAGTGT
 A C G T A C G T A C G T A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PB0125.1_Gata3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AGACATGTTC------
TTTTGTAGATTTTATCGACTTA
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A C G T G C A T C A G T T C A G A G C T G C T A C T A G G C T A G A C T C G A T A C G T G A C T C T G A A C G T G A T C C T A G T C G A A T G C C G A T G C A T G T C A

CLOCK/MA0819.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGACATGTTC
AACACGTGTT-
 A C G T C T G A T A C G G C T A T G A C C T G A G A C T A C T G G C A T A C G T A G T C
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T