Information for 10-AGAGCACTCT (Motif 22)

C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T
Reverse Opposite:
C G T A T A C G C G T A T A C G G C A T A T C G A G T C C G A T G A T C G C A T
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.665
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif6.18%
Number of Background Sequences with motif1241.5
Percentage of Background Sequences with motif2.59%
Average Position of motif in Targets46.7 +/- 25.1bp
Average Position of motif in Background51.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----AGAGCACTCT---
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGAGCACTCT-
-AAGCACTTAA
 C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGAGCACTCT-
-AASCACTCAA
 C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGAGCACTCT-
-MRSCACTYAA
 C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGAGCACTCT--
-AGCCACTCAAG
 C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGAGCACTCT--
--RSCACTYRAG
 C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T A C G T
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGAGCACTCT--
--NSCACTYVAV
 C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T A C G T
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

POL002.1_INR/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGAGCACTCT-
---TCAGTCTT
 C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T
A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGAGCACTCT-
GCGACCACACTG
 A C G T C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

ISL2/MA0914.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGAGCACTCT-
---GCACTTAA
 C G T A C T A G G C T A T C A G A T G C C G T A A T G C G A C T A T G C G C A T A C G T
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A