Information for 11-AGAGCWCTTCAAA (Motif 9)

C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T C T A G C G T A C G T A A T C G C G T A A C T G A G T C A C G T A G T C A C G T
p-value:1e-13
log p-value:-3.003e+01
Information Content per bp:1.782
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.5 +/- 19.8bp
Average Position of motif in Background37.3 +/- 14.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:AGAGCWCTTCAAA-
-----NATTCAAAT
 C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AGAGCWCTTCAAA--
-----ACATCAAAGG
 C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TCF7L2/MA0523.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGAGCWCTTCAAA----
---AAAGATCAAAGGAA
 C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAGCWCTTCAAA---
AAAGCTCGTAAAATTT
 C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGAGCWCTTCAAA--
-----ACWTCAAAGG
 C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

MSC/MA0665.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAGCWCTTCAAA
AACAGCTGTT----
 A C G T C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A
C T G A T G C A A T G C C G T A A T C G A T G C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGAGCWCTTCAAA----
-----ACATCAAAGGNA
 C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGAGCWCTTCAAA
---NCYAATAAAA
 C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A
A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGAGCWCTTCAAA---
ATAACCACTTGAAAATT
 A C G T C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGAGCWCTTCAAA-
---GCTCGTAAAAA
 C G T A T A C G C G T A C T A G A G T C C G A T T A G C C G A T C G A T G A T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A