Information for 15-CATAAATCAC (Motif 26)

A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G
p-value:1e-6
log p-value:-1.581e+01
Information Content per bp:1.959
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 27.6bp
Average Position of motif in Background49.5 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CATAAATCAC
GCCATAAATCA-
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC
GGCCATAAATCAC
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC
GGCCATAAATCA-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC
GGCCATAAATCA-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CATAAATCAC
TCATCAATCA-
 A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC
NGYCATAAAWCH-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CATAAATCAC
RGCCATYAATCA-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CATAAATCAC
GYCATCMATCAT
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PB0176.1_Sox5_2/Jaspar

Match Rank:9
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC--
TATCATAATTAAGGA
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CATAAATCAC--
--CAAATCACTG
 A G T C C G T A A C G T C G T A C G T A C G T A A C G T G T A C C G T A A G T C A C G T A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G