Information for 23-CTGCCTGACAAAT (Motif 22)

G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
Reverse Opposite:
C G T A A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C T A G A G T C C G T A A C T G
p-value:1e-8
log p-value:-1.922e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.6 +/- 16.6bp
Average Position of motif in Background31.4 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTGCCTGACAAAT---
-ACCGTGACTAATTNN
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CTGCCTGACAAAT
----TTGACAG--
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCTGACAAAT
ATTTGCATAACAAAG
 A C G T A C G T G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTGCCTGACAAAT
---RHTGWCAR--
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGCCTGACAAAT
CTGTCTGTCACCT
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CTGCCTGACAAAT
-----TGTCANYT
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGCCTGACAAAT
BTGABTGACAGS-
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGCCTGACAAAT
---GCTGTCAA--
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTGCCTGACAAAT
--VGCTGWCAVB-
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGCCTGACAAAT
-TGTCTGDCACCT
 G T A C A C G T A C T G A G T C G T A C A C G T C T A G C G T A A G T C C G T A C G T A C G T A C G A T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T