Information for 18-TTBCTGGGGCAAC (Motif 17)

A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C
Reverse Opposite:
C T A G A C G T C G A T A C T G A G T C A G T C A G T C A G T C C G T A A C T G T A C G G T C A C G T A
p-value:1e-10
log p-value:-2.390e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.5 +/- 23.1bp
Average Position of motif in Background63.8 +/- 17.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTBCTGGGGCAAC
ANTGCCTGAGGCAAN
 A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C
C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTBCTGGGGCAAC
ATTGCCTGAGGCAAT
 A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTBCTGGGGCAAC-
TTGCCATGGCAACN
 A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTBCTGGGGCAAC-
TTGCCATGGCAACC
 A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTBCTGGGGCAAC
TGCCTGAGGCN--
 A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTBCTGGGGCAAC
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTBCTGGGGCAAC
CGGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTBCTGGGGCAAC-
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTBCTGGGGCAAC
ATTGCCTGAGGCGAA
 A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C
C G T A G C A T G A C T A T C G G T A C A G T C A G C T A T C G T C G A C T A G A C T G T A G C C T A G G C T A C G T A

PB0204.1_Zfp740_2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTBCTGGGGCAAC--
ANTNCCGGGGGGAANTT
 A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G C T A G A C T G A C T G A G T C C G T A C G T A A G T C A C G T A C G T
C T G A A G T C G A C T G A C T T A G C A T G C T A C G T A C G A C T G C T A G C T A G C T A G C G T A G T C A G A C T G A C T G A C T