Information for 3-BCCCAKTGGT (Motif 5)

A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T
Reverse Opposite:
C T G A G A T C A G T C G T C A G T C A A G C T A T C G T C A G A C T G T G C A
p-value:1e-8
log p-value:-2.006e+01
Information Content per bp:1.688
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif17.28%
Number of Background Sequences with motif1953.7
Percentage of Background Sequences with motif4.63%
Average Position of motif in Targets49.0 +/- 26.3bp
Average Position of motif in Background50.4 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:BCCCAKTGGT-
-CCGATTGGCT
 A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:BCCCAKTGGT------
-CTGATTGGTCNATTT
 A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----BCCCAKTGGT---
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:BCCCAKTGGT----
--TGATTGGCTANN
 A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---BCCCAKTGGT----
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:BCCCAKTGGT-
-TTRAGTGSYK
 A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:BCCCAKTGGT-
--CCATTGTTC
 A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--BCCCAKTGGT
GTCCCCAGGGGA
 A C G T A C G T A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:BCCCAKTGGT--
--CCATTGTTYB
 A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:BCCCAKTGGT-
-NCCATTGTTC
 A C G T A G T C A G T C T A G C C T G A A C G T A C G T A C T G C T A G G A C T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C