Information for 3-GTCAGAGTGACCT (Motif 5)

C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T
Reverse Opposite:
G C T A C A T G T A C G A C G T A T G C G C T A A T G C G A C T T A G C A G C T A C T G T C G A G A T C
p-value:1e-16
log p-value:-3.737e+01
Information Content per bp:1.627
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.67%
Number of Background Sequences with motif632.8
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets51.2 +/- 27.6bp
Average Position of motif in Background51.6 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGAGTGACCT-
GGTCANNGTGACCTN
 A C G T C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGAGTGACCT
AGGNCANNGTGACCT
 A C G T A C G T C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GTCAGAGTGACCT-
AAGGTCACGGTGACCTG
 A C G T A C G T A C G T C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----GTCAGAGTGACCT--
AGTAGGTCACNGTGACCTAC
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T A C G T A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.72
Offset:6
Orientation:reverse strand
Alignment:GTCAGAGTGACCT-
------GTGACCTT
 C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.69
Offset:7
Orientation:reverse strand
Alignment:GTCAGAGTGACCT
-------TGACCT
 C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.69
Offset:7
Orientation:reverse strand
Alignment:GTCAGAGTGACCT--
-------TGACCTYA
 C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGAGTGACCT--
TGACCCAGTGACCTAC
 A C G T C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T A C G T A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.67
Offset:7
Orientation:reverse strand
Alignment:GTCAGAGTGACCT----
-------TGACCTTGAT
 C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.67
Offset:6
Orientation:forward strand
Alignment:GTCAGAGTGACCT---
------NTGACCTTGA
 C T A G A C G T T G A C T C G A A T C G C T G A T A C G C G A T A T C G T G C A A T G C G A T C C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A