Information for 20-CMAGCAMTGWAYA (Motif 30)

A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T C T A G A C G T C G A T A G T C C G T A A C G T A C G T A C T G A G T C A C G T A C G T A C T G
p-value:1e-7
log p-value:-1.613e+01
Information Content per bp:1.876
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.1 +/- 20.3bp
Average Position of motif in Background54.5 +/- 36.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CMAGCAMTGWAYA---
ACAAGCAATTAATGAAT
 A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CMAGCAMTGWAYA---
ACAAGCAATTAATGAAT
 A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CMAGCAMTGWAYA---
ACAAGCAATTAAAGAAT
 A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CMAGCAMTGWAYA---
ACAAGCAATTAAAGAAT
 A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CMAGCAMTGWAYA---
ACAAGCAATTAAAGAAT
 A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CMAGCAMTGWAYA---
ACAAGCAATTAAAGAAT
 A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0063.1_Hoxb8/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CMAGCAMTGWAYA--
ACCGGCAATTAATAAA
 A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CMAGCAMTGWAYA
-AAGCACTTAA--
 A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CMAGCAMTGWAYA
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CMAGCAMTGWAYA-
AAAAACCAATTAAGAA
 A C G T A C G T A G T C G T C A C G T A A C T G G T A C C G T A T G C A A C G T A C T G C G T A C G T A A G T C C G T A A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A