Information for 5-GTCAGTKCAACCT (Motif 3)

A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T
Reverse Opposite:
C T G A A C T G C T A G A C G T A C G T A T C G T G C A G T C A A T G C C G A T A T C G C G T A A G T C
p-value:1e-26
log p-value:-6.143e+01
Information Content per bp:1.786
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif15.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.8 +/- 26.8bp
Average Position of motif in Background42.8 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR2/MA0258.2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCAGTKCAACCT
AGGTCACCCTGACCT
 A C G T A C G T A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGTKCAACCT-
GGTCANNGTGACCTN
 A C G T A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGTKCAACCT-
CAGGTCACCGTGACCTT
 A C G T A C G T A C G T A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

SREBF2/MA0596.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTCAGTKCAACCT
ATCACCCCAT---
 A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T
C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGTKCAACCT
NTGTCAN--------
 A C G T A C G T A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTCAGTKCAACCT
CNGTCACGCCAC---
 A C G T A C G T A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GTCAGTKCAACCT
-TRAGGTCA----
 A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GTCAGTKCAACCT
AGTCACGC------
 A C G T A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GTCAGTKCAACCT------
---NNNNCAACCTTCGNGA
 A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

SREBF1/MA0595.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GTCAGTKCAACCT
ATCACCCCAC---
 A C T G A C G T A T G C C G T A A T C G A C G T A C G T A T G C C G T A T G C A A G T C G T A C A G C T
T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C A C G T A C G T A C G T