Information for 12-TTTATAAAGC (Motif 28)

C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C
Reverse Opposite:
A T C G T A G C A C G T A G C T A C G T C T G A G A C T C G T A C T G A C G T A
p-value:1e-7
log p-value:-1.666e+01
Information Content per bp:1.841
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif71.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets55.7 +/- 25.0bp
Average Position of motif in Background48.6 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TTTATAAAGC-
NGYCATAAAWCH
 A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.65
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAAAGC
NNNNNNCTTTTATAN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.65
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAAAGC
NNNNNNCTTTTATAN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTTATAAAGC-
CCTTTTATAGNC
 A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0080.1_Tbp_1/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TTTATAAAGC--
TCTTTATATATAAATA
 A C G T A C G T A C G T A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

PB0187.1_Tcf7_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTATAAAGC--
NNNTTTNTAATACNG
 A C G T A C G T A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTTATAAAGC
GCAATAAAA-
 C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TTTATAAAGC--
TAAGATTATAATACGG
 A C G T A C G T A C G T A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0129.1_Glis2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TTTATAAAGC
AATATTAATAAAGA
 A C G T A C G T A C G T A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TTTATAAAGC---
CTACCAATAAAATTCT
 A C G T A C G T A C G T C G A T A G C T C G A T C T G A A G C T C G T A C T G A C G T A A T C G A T G C A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T