Information for 19-GCCGAGGTTGGCAATG (Motif 26)

A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
Reverse Opposite:
A G T C C G T A A C G T A G C T A C T G A G T C A G T C C G T A C G T A A G T C G T A C C G A T A T G C A C T G A C T G A G T C
p-value:1e-7
log p-value:-1.774e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.0 +/- 24.8bp
Average Position of motif in Background68.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCCGAGGTTGGCAATG
-----GGTTGGCAT--
 A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCGAGGTTGGCAATG-
-NGTAGGTTGGCATNNN
 A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCCGAGGTTGGCAATG
------NTTGGCANN-
 A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCCGAGGTTGGCAATG
------CTTGGCAA--
 A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCCGAGGTTGGCAATG
-----NNTTGGCANN-
 A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GCCGAGGTTGGCAATG
-------TTGGCA---
 A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GCCGAGGTTGGCAATG
-----NGTGGGCAT--
 A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCCGAGGTTGGCAATG
GCAGTGATTT------
 A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--GCCGAGGTTGGCAATG--
TGGCCANNNNNGGAACTGCA
 A C G T A C G T A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G A C G T A C G T
G C A T C T A G C A T G G A T C G A T C C T G A G A T C G C A T A C T G A G C T C A G T C T A G C A T G G C T A C G T A A G T C C G A T C T A G A T G C G C T A

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCCGAGGTTGGCAATG
TGCTGTGATTT------
 A C G T A C T G A G T C A G T C A T C G C G T A A C T G A C T G C G A T A C G T A C T G A C T G A G T C C T G A G T C A C G A T A C T G
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T