Information for 3-YGCCCTGMCC (Motif 2)

A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C
Reverse Opposite:
A T C G C T A G A C G T T A G C C T G A T A C G C A T G A C T G G T A C T C A G
p-value:1e-30
log p-value:-6.930e+01
Information Content per bp:1.626
Number of Target Sequences with motif136.0
Percentage of Target Sequences with motif21.79%
Number of Background Sequences with motif3428.6
Percentage of Background Sequences with motif7.26%
Average Position of motif in Targets52.0 +/- 26.7bp
Average Position of motif in Background50.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-YGCCCTGMCC
CTGCCCGCA--
 A C G T A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:YGCCCTGMCC--
KGCCCTTCCCCA
 A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C A C G T A C G T
C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A

INSM1/MA0155.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--YGCCCTGMCC
CGCCCCCTGACA
 A C G T A C G T A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:YGCCCTGMCC--
GGCCCCGCCCCC
 A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C A C G T A C G T
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:YGCCCTGMCC
TGACCTYA--
 A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:YGCCCTGMCC
TGCCCAGNHW
 A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YGCCCTGMCC
--CCCCCCCC
 A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C
A C G T A C G T A G T C A G T C A T G C A G T C A G T C G A T C A G T C A G T C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-YGCCCTGMCC-
TGACCTTGACCT
 A C G T A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:YGCCCTGMCC-
-----TGACCT
 A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

POL003.1_GC-box/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-YGCCCTGMCC---
NAGCCCCGCCCCCN
 A C G T A G T C C A T G T G A C G T A C A T G C G A C T A T C G T G C A G A T C T A G C A C G T A C G T A C G T
G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T