Information for 12-AATGGCTGGT (Motif 17)

C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
Reverse Opposite:
C T G A A T G C G A T C C G T A A C T G A T G C G T A C T C G A G A C T C G A T
p-value:1e-9
log p-value:-2.232e+01
Information Content per bp:1.827
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif123.5
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets39.1 +/- 26.9bp
Average Position of motif in Background50.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AATGGCTGGT
TAATGGCGGNC
 A C G T C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCTGGT
GTTAATGGCC---
 A C G T A C G T A C G T C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTGGT
TGATTGGCTANN
 A C G T A C G T C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AATGGCTGGT
---NGCTN--
 C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATGGCTGGT
-TWGTCTGV-
 C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATGGCTGGT--
GCAACAGCTGTTGT
 A C G T A C G T C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T A C G T A C G T
T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCTGGT----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

MSC/MA0665.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AATGGCTGGT
AACAGCTGTT
 C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
T C G A T C G A G T A C C G T A A T C G A T G C A C G T T A C G A C G T G A C T

Hmx3/MA0898.1/Jaspar

Match Rank:9
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------AATGGCTGGT
ATTNNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:10
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------AATGGCTGGT
ATTNNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A G C T C A T G A T C G A G T C A C G T C T A G T A C G A G C T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T