Information for 12-AGAAAGGCAGTAA (Motif 10)

C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A
Reverse Opposite:
C G A T A C G T C G T A A G T C A C G T A C T G G T A C A G T C A C G T A C G T A C G T A G T C A C G T
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.945
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 15.9bp
Average Position of motif in Background42.5 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGAAAGGCAGTAA--
GGAAGGAAGGAAGGAAGG
 A C G T A C G T A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

ONECUT3/MA0757.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAAAGGCAGTAA-
AAAAAATCAATAAT
 C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

PB0137.1_Irf3_2/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGAAAGGCAGTAA
GGAGAAAGGTGCGA-
 A C G T A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGAAAGGCAGTAA
AAAACAAAGG------
 A C G T A C G T A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGAAAGGCAGTAA
AACAAAGG------
 A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGAAAGGCAGTAA-----
--AAAGGTAATAAAATTT
 C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

SPIC/MA0687.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGAAAGGCAGTAA
AAAAAGAGGAAGTA-
 A C G T A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGAAAGGCAGTAA
-AAAAGTCAA---
 C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

PB0012.1_Elf3_1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGAAAGGCAGTAA
AACAAGGAAGTAA
 C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A
C G A T C G T A G T A C T G C A T G C A C T A G C A T G C G T A G C T A T C A G G A C T C G T A T C G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGAAAGGCAGTAA
RACAAWGG------
 A C G T C G T A A C T G C G T A C G T A C G T A A C T G A C T G A G T C C G T A C T A G A C G T C G T A C G T A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T