Information for 14-GTCTWAGAGG (Motif 37)

T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G
Reverse Opposite:
A T G C T A G C C G A T A G T C A C G T C G T A C T G A C T A G T C G A A G T C
p-value:1e-6
log p-value:-1.409e+01
Information Content per bp:1.665
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets69.2 +/- 11.8bp
Average Position of motif in Background40.8 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTCTWAGAGG
TWGTCTGV----
 A C G T A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTCTWAGAGG--
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTCTWAGAGG--
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTCTWAGAGG
GNCTATAAAAGG
 A C G T A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTCTWAGAGG
NGGGATTA----
 A C G T A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GTCTWAGAGG--
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTCTWAGAGG
GGATTAGC--
 T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTCTWAGAGG
GGGATTAA---
 A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTCTWAGAGG
NGGATTAN---
 A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCTWAGAGG---
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T T C A G A G C T G A T C G A C T G C A T C G T A C T A G G C T A A T C G A T C G A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T