Information for 21-CGCTGCCATAGCG (Motif 35)

A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A G C T C G T A A G C T A C T G A C T G A G T C C G T A C T A G A G T C A C T G
p-value:1e-6
log p-value:-1.499e+01
Information Content per bp:1.861
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.2 +/- 8.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGCTGCCATAGCG-
NGTTGCCATGGCAA
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0127.1_Gata6_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGCTGCCATAGCG----
NGCTGCGATATCGNCGC
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T A C G T A C G T A C G T
G T A C C T A G T A G C A C G T T A C G G T A C C A T G T G C A C A G T G T C A A C G T G T A C C A T G A G T C T A G C T A C G G T A C

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGCTGCCATAGCG--
-GTTGCCATGGNAAC
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGCTGCCATAGCG---
CGTTGCCATGGCAACG
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCTGCCATAGCG---
CGTTGCCATGGCAACG
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGCTGCCATAGCG---
-GTTGCCATGGCAACM
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T A C G T A C G T
A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGCTGCCATAGCG---
CGTTGCCATGGCAACN
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGCTGCCATAGCG----
-GTTGCCATGGCAACCG
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T A C G T A C G T A C G T
A C G T C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGCTGCCATAGCG---
CGTTGCCATGGCAACN
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCTGCCATAGCG-
GGTTGCCATGGCAA
 A G T C A C T G A G T C A C G T C T A G A G T C G T A C C T G A A C G T C T G A C T A G A G T C A C T G A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A