Information for 19-GCCTTCTGCCACA (Motif 33)

A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A A C T G C T A G T G A C
p-value:1e-6
log p-value:-1.527e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.5 +/- 26.2bp
Average Position of motif in Background49.5 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCTTCTGCCACA
GCCATCTGTT---
 A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCCTTCTGCCACA
TTGGCATGGTGCCA--
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCTTCTGCCACA
TGACCTTTGCCCCA
 A C G T A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCCTTCTGCCACA-
--TGTCTGDCACCT
 A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCCTTCTGCCACA
-----TTGCCAAG
 A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCTTCTGCCACA-
-CTGTCTGTCACCT
 A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GCCTTCTGCCACA
CCNNACCATCTGGCCTN
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTCTGCCACA-
TGACCTTTGCCCTAN
 A C G T A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCTTCTGCCACA
ACCATCTGTT---
 A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GCCTTCTGCCACA
------TGCCAA-
 A C T G A G T C A G T C A C G T A C G T G T A C A C G T A C T G A G T C A G T C C G T A G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T