Information for 6-NAACAATGGC (Motif 3)

C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
Reverse Opposite:
A T C G T A G C A G T C C G T A G A C T A C G T A T C G A C G T A C G T G A C T
p-value:1e-16
log p-value:-3.913e+01
Information Content per bp:1.664
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif17.14%
Number of Background Sequences with motif3030.9
Percentage of Background Sequences with motif6.60%
Average Position of motif in Targets50.7 +/- 27.7bp
Average Position of motif in Background50.0 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:NAACAATGGC
GAACAATGGN
 C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-NAACAATGGC
VRAACAATGG-
 A C G T C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.94
Offset:0
Orientation:forward strand
Alignment:NAACAATGGC
RAACAATGGN
 C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:NAACAATGGC
-RACAAWGG-
 C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:NAACAATGGC
-AACAAAGG-
 C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-NAACAATGGC
VRRACAAWGG-
 A C G T C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-NAACAATGGC
RNAACAATGG-
 A C G T C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:NAACAATGGC
GAACAATGG-
 C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-NAACAATGGC
AAAACAATGG-
 A C G T C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:NAACAATGGC
--ACAAAG--
 C T G A T G C A C G T A T A G C C G T A C T G A C G A T C T A G A T C G T A G C
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T