Information for 9-CMTGKSTGGMKCTSRG (Motif 25)

A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
Reverse Opposite:
A G T C A G T C A T G C C G T A A C T G G T A C A C G T A G T C A G T C C G T A A T C G G T A C A G T C C G T A A C T G A C T G
p-value:1e-9
log p-value:-2.078e+01
Information Content per bp:1.829
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.7 +/- 21.3bp
Average Position of motif in Background39.7 +/- 0.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CMTGKSTGGMKCTSRG
NNTNNTGTCTGGNNTNG--
 A C G T A C G T A C G T A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CMTGKSTGGMKCTSRG
CGTGGGTGGTCC----
 A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CMTGKSTGGMKCTSRG
-CTGTCTGG-------
 A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CMTGKSTGGMKCTSRG
VBSYGTCTGG-------
 A C G T A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CMTGKSTGGMKCTSRG
-TWGTCTGV-------
 A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------CMTGKSTGGMKCTSRG
GTCATGCHTGRCTGS-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:7
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CMTGKSTGGMKCTSRG
-----GTGGAT-----
 A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CMTGKSTGGMKCTSRG
NNVDGGGYGGGGCYN--
 A C G T A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CMTGKSTGGMKCTSRG
--TGGGTGTGGC----
 A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CMTGKSTGGMKCTSRG
--TGTCTGDCACCT--
 A G T C G T A C A C G T A C T G A C T G T A G C C G A T A C T G A C T G G T C A A C T G A G T C A C G T A T C G C T A G A C T G
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T