Information for 8-VGTTDAGCCAATTGCA (Motif 24)

T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G G T A C C T G A C G T A A C G T A C G T A C T G A C T G A T G C A C G T G A T C C G T A C G T A A T G C A G T C
p-value:1e-9
log p-value:-2.078e+01
Information Content per bp:1.787
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 22.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0009.1_Bsx/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:VGTTDAGCCAATTGCA--
--NTNAGNTAATTACCTN
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T G A T C G A C T A T C G T C G A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A G T A C G A T C A C G T A C T G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:VGTTDAGCCAATTGCA
-----AGCCAATCGG-
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:VGTTDAGCCAATTGCA
--ACTAGCCAATCA--
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:VGTTDAGCCAATTGCA---
---TAAGCCACTTGAAATT
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:VGTTDAGCCAATTGCA---
---TAAGCCACTTGAATTT
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:VGTTDAGCCAATTGCA---
---TAAGCCACTTGAAATT
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:VGTTDAGCCAATTGCA
--ATAATCCC------
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A
A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:VGTTDAGCCAATTGCA
-----TGCCAA-----
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

PH0007.1_Barx1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:VGTTDAGCCAATTGCA--
--ATNNACTAATTACTTT
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T C G T A G C A T C A G T G A T C T C G A T A G C G A C T T G C A G T C A A C G T A C G T C T G A A T G C A G C T C A G T C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:VGTTDAGCCAATTGCA
--TTATGCAAAT----
 T A C G A T C G G C A T A C G T C A T G G T C A A T C G G T A C G T A C C G T A G T C A A C G T G A C T A C T G A G T C C G T A
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T