Information for 3-TGTCAATATTGAC (Motif 2)

C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C
Reverse Opposite:
C T A G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C G T C A
p-value:1e-20
log p-value:-4.621e+01
Information Content per bp:1.867
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.9 +/- 15.0bp
Average Position of motif in Background45.1 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAATATTGAC
NNTNNCAATATTAG-
 A C G T A C G T C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAATATTGAC
NNTNNCAATATTAG-
 A C G T A C G T C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TGTCAATATTGAC
TATGTAAATAT----
 A C G T A C G T C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGTCAATATTGAC
TATGTAAATAT----
 A C G T A C G T C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TGTCAATATTGAC
---GAATATTCAT
 C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C
A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTCAATATTGAC---
-ATGAATATTCATGAG
 C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGTCAATATTGAC
NCWRWGTAAACANSV--
 A C G T A C G T A C G T A C G T C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGTCAATATTGAC
GGTTAAACATTAA-
 A C G T C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGTCAATATTGAC---
----TTTGTTTACTTA
 C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:10
Score:0.59
Offset:6
Orientation:forward strand
Alignment:TGTCAATATTGAC---
------TRTTTACTTW
 C A G T A C T G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A