Information for 2-RAACAAWGRV (Motif 2)

C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
Reverse Opposite:
A G C T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T A G C T
p-value:1e-39
log p-value:-9.014e+01
Information Content per bp:1.717
Number of Target Sequences with motif164.0
Percentage of Target Sequences with motif34.02%
Number of Background Sequences with motif5263.7
Percentage of Background Sequences with motif11.26%
Average Position of motif in Targets50.4 +/- 25.6bp
Average Position of motif in Background49.9 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:RAACAAWGRV
RAACAATGGN
 C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-RAACAAWGRV
VRRACAAWGG-
 A C G T C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-RAACAAWGRV
AAAACAATGG-
 A C G T C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-RAACAAWGRV
RNAACAATGG-
 A C G T C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:RAACAAWGRV
GAACAATGGN
 C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-RAACAAWGRV
VRAACAATGG-
 A C G T C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:RAACAAWGRV
-RACAAWGG-
 C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---RAACAAWGRV--
CTCACACAATGGCGC
 A C G T A C G T A C G T C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----RAACAAWGRV--
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T A C G T C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-RAACAAWGRV
AAAACAAAGG-
 A C G T C T G A T G C A C G T A A G T C C G T A C G T A C G A T T C A G T C A G T C G A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T