Information for 11-AGACAATTGC (Motif 9)

C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C
Reverse Opposite:
A T C G T A G C C G T A C G T A A G C T A C G T C T A G C A G T A T G C A C G T
p-value:1e-15
log p-value:-3.551e+01
Information Content per bp:1.848
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.98%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets50.4 +/- 29.4bp
Average Position of motif in Background55.8 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0024.1_Dlx5/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---AGACAATTGC---
NANNGNTAATTACCNN
 A C G T A C G T A C G T C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C A C G T A C G T A C G T
A T G C T C G A A C T G T G C A T C A G A T G C G A C T G T C A C G T A G A C T C A G T C T G A A G T C A G T C A T G C T A G C

PH0009.1_Bsx/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---AGACAATTGC---
NTNAGNTAATTACCTN
 A C G T A C G T A C G T C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C A C G T A C G T A C G T
G A T C G A C T A T C G T C G A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A G T A C G A T C A C G T A C T G

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AGACAATTGC--
CTCACACAATGGCGC
 A C G T A C G T A C G T C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----AGACAATTGC
NNCNNAACAATTNT
 A C G T A C G T A C G T A C G T C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PH0007.1_Barx1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGACAATTGC-----
AAAGTAATTAGTGAAT
 A C G T C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C A C G T A C G T A C G T A C G T A C G T
G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGACAATTGC
RAACAATGGN
 C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AGACAATTGC---
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGACAATTGC
-GACAATGNN
 C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Nkx2-5/MA0063.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGACAATTGC
--TTAATTG-
 C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C
A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGACAATTGC
VRAACAATGG-
 A C G T C G T A T A C G G C T A A G T C C G T A C T G A A C G T C G A T A C T G A T G C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T