Information for 3-WGTTTGCCAAGCAATT (Motif 6)

G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G A T T A C G A G T C C G A T C A G T A C T G A C T G G T A C G C T A T C G A C G T A A T G C C G T A
p-value:1e-18
log p-value:-4.335e+01
Information Content per bp:1.658
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.4 +/- 16.7bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.64
Offset:6
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT-------
------ACAAGCAATTAATGAAT
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.64
Offset:6
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT-------
------ACAAGCAATTAATGAAT
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:3
Score:0.63
Offset:6
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT-------
------ACAAGCAATTAAAGAAT
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT-------
------ACAAGCAATTAAAGAAT
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT-------
------ACAAGCAATTAAAGAAT
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:6
Score:0.62
Offset:6
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT-------
------ACAAGCAATTAAAGAAT
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT
---TTGCCAAG-----
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT
--GGTGCCAAGT----
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:WGTTTGCCAAGCAATT
----TGCCCAGNHW--
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T
A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:WGTTTGCCAAGCAATT-----
-----AAAAACCAATTAAGAA
 G C A T T A C G C G A T A G C T C A G T A C T G G T A C G T A C G T C A C G T A C T A G A T G C G C T A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A