Information for 6-GTTTGTATTG (Motif 4)

T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G
Reverse Opposite:
G A T C G T C A C T G A C A G T C G T A G T A C G C T A C T G A G C T A A G T C
p-value:1e-18
log p-value:-4.363e+01
Information Content per bp:1.685
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif8.65%
Number of Background Sequences with motif324.0
Percentage of Background Sequences with motif2.40%
Average Position of motif in Targets52.6 +/- 27.3bp
Average Position of motif in Background49.3 +/- 35.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GTTTGTATTG----
NNANTTTTATTGGNNN
 A C G T A C G T T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GTTTGTATTG-
-TTTTTATTGG
 T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G A C G T
A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GTTTGTATTG-
-NTTTTATTGG
 T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G A C G T
A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GTTTGTATTG----
NNAATTTTATTGGNTN
 A C G T A C G T T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTTTGTATTG-
-NTTTTATTGG
 T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G A C G T
A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTTGTATTG---
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G A C G T A C G T A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTTTGTATTG
ATTTGAATT-
 T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTTTGTATTG-
-TTTTTATTGC
 T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G A C G T
A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTTTGTATTG
CCTTTGTTTT-
 A C G T T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GTTTGTATTG----
NGANTTTTATGGCTCN
 A C G T A C G T T C A G C G A T A G C T C G A T A C T G G C A T G T C A G A C T C A G T C T A G A C G T A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T