Information for 10-CCATTAAATAACTRCT (Motif 30)

A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
Reverse Opposite:
C T G A C T A G A G T C C G T A C T A G C A G T A G C T C G T A C G A T A C G T A C G T G T C A C G T A A G C T A C T G T C A G
p-value:1e-8
log p-value:-2.050e+01
Information Content per bp:1.658
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif26.5
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets48.5 +/- 26.8bp
Average Position of motif in Background44.4 +/- 37.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCATTAAATAACTRCT
NGCAATTAAA--------
 A C G T A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCATTAAATAACTRCT
GCAATAAAAA-------
 A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0154.1_Prrx1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCATTAAATAACTRCT
GTAACTAATTAACTACT
 A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCATTAAATAACTRCT
ACGGCCATAAAATTAAT---
 A C G T A C G T A C G T A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCATTAAATAACTRCT
--ATTAAA--------
 A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxd8/MA0910.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCATTAAATAACTRCT
NAGCCATTAATTANTTA--
 A C G T A C G T A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A A C G T A C G T

PH0080.1_Hoxd8/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCATTAAATAACTRCT
NAGCCATTAATTANTTA--
 A C G T A C G T A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCATTAAATAACTRCT
AATGCAATAAAATTTAT---
 A C G T A C G T A C G T A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCATTAAATAACTRCT
NCYAATAAAA--------
 A C G T A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCATTAAATAACTRCT
GTTCAAAAAAAAAATTC-
 A C G T A C G T A G T C G T A C C T G A C G A T C A G T C G T A C G T A C G T A C G A T T C G A G C T A G A T C C G A T T C A G A G T C G A C T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C A C G T