Information for 1-TRMTRTTKACTTTGBH (Motif 3)

A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
Reverse Opposite:
C G A T T G C A A G T C G C T A C T G A C G T A A C T G C G A T G T C A G T C A G T C A A G T C C G T A C A T G G A C T C T G A
p-value:1e-24
log p-value:-5.613e+01
Information Content per bp:1.644
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.08%
Number of Background Sequences with motif44.5
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets55.5 +/- 20.5bp
Average Position of motif in Background49.6 +/- 44.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa2/MA0047.2/Jaspar

Match Rank:1
Score:0.89
Offset:3
Orientation:forward strand
Alignment:TRMTRTTKACTTTGBH
---TGTTTACTTAGG-
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:2
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TRMTRTTKACTTTGBH
BSNTGTTTACWYWGN-
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-TRMTRTTKACTTTGBH
TCCATGTTTACTTTG--
 A C G T A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.85
Offset:3
Orientation:reverse strand
Alignment:TRMTRTTKACTTTGBH
---TGTTTACTTT---
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.85
Offset:3
Orientation:reverse strand
Alignment:TRMTRTTKACTTTGBH
---TGTTTACTTT---
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.84
Offset:3
Orientation:forward strand
Alignment:TRMTRTTKACTTTGBH
---TRTTTACTTW---
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A C G T A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:7
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:TRMTRTTKACTTTGBH
--ATATTTACATA---
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:TRMTRTTKACTTTGBH
-TTTGTTTACTTA---
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A C G T C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:9
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:TRMTRTTKACTTTGBH
--ATATTTACATA---
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TRMTRTTKACTTTGBH
-CNTGTTTACATA---
 A G C T C T G A G T A C A C G T C T A G A C G T A C G T A C G T C G T A T G A C G C A T A G C T C G A T T C A G A C G T G C T A
A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T A C G T