Information for 19-GTTCATTTMCCTT (Motif 21)

A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
Reverse Opposite:
C T G A C T G A C A T G C A T G A C G T C G T A C G T A C G T A C G A T C A T G G T C A T G C A A T G C
p-value:1e-10
log p-value:-2.451e+01
Information Content per bp:1.716
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.5 +/- 27.1bp
Average Position of motif in Background72.1 +/- 12.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTTCATTTMCCTT
AGGTCANTGACCTN
 A C G T A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

PH0174.1_Vax1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTTCATTTMCCTT
CTNNGNTAATTAACNT-
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T A C G T

Hoxd3/MA0912.1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTTCATTTMCCTT
TTGAGTTAATTAACCT-
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T A C G T

PH0079.1_Hoxd3/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTTCATTTMCCTT
TTGAGTTAATTAACCT-
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T A C G T

LMX1B/MA0703.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTTCATTTMCCTT
-TTAATTAN----
 A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
A C G T A G C T C G A T G C T A G C T A C G A T G C A T C T G A T G C A A C G T A C G T A C G T A C G T

Hoxb5/MA0904.1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GTTCATTTMCCTT
ATGNGCTAATTANCNT-
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T A C G T

PH0060.1_Hoxb5/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GTTCATTTMCCTT
ATGNGCTAATTANCNT-
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T A C G T

PH0049.1_Hoxa2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GTTCATTTMCCTT
NTGAGCTAATTACCNT-
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T A C G T

PH0052.1_Hoxa5/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GTTCATTTMCCTT
NTGAGCTAATTACCNT-
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T A C G T

RAX/MA0718.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTCATTTMCCTT
NTTAATTGNN---
 A T C G A C G T A C G T G T A C C G T A A C G T A C G T A C G T T G C A G T A C G T A C G A C T A G C T
C T A G G A C T G C A T C G T A C G T A C A G T C G A T C T A G T C A G A G T C A C G T A C G T A C G T