Information for 9-WTAGWRGCCATTS (Motif 11)

C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G
Reverse Opposite:
A T C G C G T A C G T A A C G T A C T G C T A G A G T C G A T C C G A T A G T C A C G T G T C A C G A T
p-value:1e-14
log p-value:-3.265e+01
Information Content per bp:1.830
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets59.2 +/- 24.7bp
Average Position of motif in Background75.8 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:WTAGWRGCCATTS--
-----GGCCATTAAC
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:WTAGWRGCCATTS-
--ACTAGCCAATCA
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:WTAGWRGCCATTS--
AGGGAAGTCATTTCT
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:WTAGWRGCCATTS-
--AGGVNCCTTTGT
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:WTAGWRGCCATTS
--GTCCGCCATTA
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G
A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:WTAGWRGCCATTS--
-----AGCCAATCGG
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:WTAGWRGCCATTS--
---GCNGCCATCTTG
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T
A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.58
Offset:7
Orientation:forward strand
Alignment:WTAGWRGCCATTS----
-------CCATTGTTYB
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:WTAGWRGCCATTS---
------NCCATTGTTY
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.56
Offset:7
Orientation:forward strand
Alignment:WTAGWRGCCATTS---
-------CCATTGTTC
 C G T A A C G T C G T A A C T G G C A T C T A G A C T G A G T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C