Information for 1-CATTGTTYWC (Motif 1)

G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
Reverse Opposite:
A T C G C G T A T C G A T G C A C T G A A G T C G T C A G C T A C G A T C T A G
p-value:1e-62
log p-value:-1.449e+02
Information Content per bp:1.631
Number of Target Sequences with motif252.0
Percentage of Target Sequences with motif31.15%
Number of Background Sequences with motif1316.2
Percentage of Background Sequences with motif9.76%
Average Position of motif in Targets52.3 +/- 27.1bp
Average Position of motif in Background50.8 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CATTGTTYWC
CCATTGTTYB-
 A C G T G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:2
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--CATTGTTYWC
NCCATTGTTY--
 A C G T A C G T G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:3
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:CATTGTTYWC
-ATTGTTTAN
 G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-CATTGTTYWC
CCATTGTTTT-
 A C G T G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-CATTGTTYWC
CCATTGTTNY-
 A C G T G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.91
Offset:1
Orientation:forward strand
Alignment:CATTGTTYWC
-ATTGTT---
 G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CATTGTTYWC
CCWTTGTYYB-
 A C G T G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.90
Offset:1
Orientation:forward strand
Alignment:CATTGTTYWC
-ATTGTTA--
 G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----CATTGTTYWC---
CNNNTATTGTTCNNNNN
 A C G T A C G T A C G T A C G T G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--CATTGTTYWC
NCCATTGTTC--
 A C G T A C G T G A T C G C T A C G A T A C G T C T A G A G C T A C G T A G C T G C A T T A G C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T