Information for 1-NAAAACAATG (Motif 2)

A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G
Reverse Opposite:
A T G C G C T A A G C T A C G T A T C G C G A T C A G T G A C T C A G T T G A C
p-value:1e-37
log p-value:-8.655e+01
Information Content per bp:1.634
Number of Target Sequences with motif233.0
Percentage of Target Sequences with motif27.51%
Number of Background Sequences with motif5332.6
Percentage of Background Sequences with motif11.30%
Average Position of motif in Targets50.4 +/- 24.9bp
Average Position of motif in Background50.8 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRY/MA0084.1/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:NAAAACAATG
GTAAACAAT-
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:NAAAACAATG-
-VRAACAATGG
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G A C G T
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.92
Offset:2
Orientation:forward strand
Alignment:NAAAACAATG--
--RAACAATGGN
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G A C G T A C G T
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:NAAAACAATG-
-AAAACAATGG
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G A C G T
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:NAAAACAATG-
-RNAACAATGG
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:NAAAACAATG-
-VRRACAAWGG
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:NAAAACAATG
---AACAAT-
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:NAAAACAATG
--NAACAAT-
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G
A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:NAAAACAATG-
--GAACAATGG
 A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G A C G T
A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-NAAAACAATG----
CTCACACAATGGCGC
 A C G T A C T G G T C A C T G A G T C A C G T A T A G C G T C A C T G A C G A T T A C G A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C