Information for 17-CTGGTCAGTGACA (Motif 18)

A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C G C T A A G T C A C G T A C T G C G T A A G T C A G T C C G T A A C T G
p-value:1e-11
log p-value:-2.670e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.5 +/- 24.4bp
Average Position of motif in Background56.1 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGGTCAGTGACA-
NAGGTCANTGACCT
 A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTGGTCAGTGACA
-AGGTCAAGGTCA
 A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTGGTCAGTGACA
-AGGTCA------
 A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTGGTCAGTGACA
-AGGTCAAGGTCA
 A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CTGGTCAGTGACA
CGCGCCGGGTCACGTA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGGTCAGTGACA--
---NTGATTGACAGN
 A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGGTCAGTGACA
CAGGTAAGTAT--
 A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTGGTCAGTGACA--
---BTGABTGACAGS
 A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTGGTCAGTGACA---
----TGAGTGACAGSC
 A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTGGTCAGTGACA
GYCTGGYYTNTGTCA
 A C G T A C G T A G T C C G A T A C T G A C T G A C G T A G T C C G T A A C T G C A G T C T A G C G T A A G T C C G T A
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A