Information for 5-CHGAGCAGTGTGA (Motif 7)

T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A
Reverse Opposite:
A G C T T A G C C G T A A T G C G T C A A T G C C G A T A C T G A T G C G A C T T A G C C A T G A T C G
p-value:1e-9
log p-value:-2.121e+01
Information Content per bp:1.581
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif12.58%
Number of Background Sequences with motif1043.4
Percentage of Background Sequences with motif2.24%
Average Position of motif in Targets54.7 +/- 27.6bp
Average Position of motif in Background49.6 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CHGAGCAGTGTGA
CACAGCAGGGGG-
 T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CHGAGCAGTGTGA--
NNNANTGCAGTGCNNTT
 A C G T A C G T T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CHGAGCAGTGTGA-
DCHCAGCAGGRGGCC
 A C G T T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CHGAGCAGTGTGA-
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CHGAGCAGTGTGA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CHGAGCAGTGTGA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CHGAGCAGTGTGA
DCTCAGCAGG----
 A C G T T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CHGAGCAGTGTGA
GCCGCGCAGTGCGT
 A C G T T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CHGAGCAGTGTGA
GAGCACAGCAGGACA-
 A C G T A C G T A C G T T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CHGAGCAGTGTGA----
--GGTCANNGTGACCTN
 T A G C G T A C A T C G C T G A T A C G G T A C C G T A A T C G C A G T T A C G G C A T A T C G T C G A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T