Information for 3-GCTGTGAGAATTA (Motif 5)

C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A
Reverse Opposite:
C G A T G T C A G T C A A C G T A C G T A T G C A C G T A G T C G T C A G T A C C G T A A T C G G A T C
p-value:1e-11
log p-value:-2.679e+01
Information Content per bp:1.722
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif6.92%
Number of Background Sequences with motif135.1
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets48.0 +/- 27.3bp
Average Position of motif in Background50.1 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0103.1_Meox1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCTGTGAGAATTA----
-CTGAGGTAATTACCNC
 C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G A T C C G A T T C A G C T G A C A T G T A C G G A C T T G C A G C T A C A G T A C G T C T G A G T A C G T A C A C G T A G T C

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCTGTGAGAATTA----
-CGTTGGGGATTAGCCT
 C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

Crx/MA0467.1/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCTGTGAGAATTA-
---AAGAGGATTAG
 C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTGAGAATTA
GAAAAGGTGTGAAAATT-
 A C G T A C G T A C G T A C G T A C G T C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T A C G T

PH0174.1_Vax1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTGTGAGAATTA----
-CTNNGNTAATTAACNT
 C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T

PH0021.1_Dlx2/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTGTGAGAATTA----
-CTGANNTAATTATNNN
 C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C

Hoxd3/MA0912.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCTGTGAGAATTA----
-TTGAGTTAATTAACCT
 C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCTGTGAGAATTA----
-TTGAGTTAATTAACCT
 C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCTGTGAGAATTA--
-----GNGGATTAGN
 C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCTGTGAGAATTA
AGGTGTGA------
 A C G T C T A G A T G C C G A T C A T G C A G T A C T G C G T A A T C G T C G A T C G A A C G T A C G T C G T A
C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T