Information for 7-TCACTAATGG (Motif 12)

A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G
Reverse Opposite:
A G T C A G T C C T G A A G C T A G C T C G T A A C T G A C G T A T C G C G T A
p-value:1e-3
log p-value:-9.037e+00
Information Content per bp:1.879
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif27.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets47.5 +/- 29.3bp
Average Position of motif in Background56.1 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TCACTAATGG-
---CTAATKGV
 A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G A C G T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCACTAATGG--
TGATTRATGGCY
 A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCACTAATGG
GTTAACTAGN--
 A C G T A C G T A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCACTAATGG-
ACCGTGACTAATTNN
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TCACTAATGG-
---NTAATTGN
 A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G A C G T
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TCACTAATGG---
---NTAATKGTTT
 A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

VENTX/MA0724.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TCACTAATGG--
---CTAATCGNT
 A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

HOXA5/MA0158.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCACTAATGG
-CACTAATT-
 A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G
A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCACTAATGG
TGATTGATGA
 A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TCACTAATGG-
---NTAATTGG
 A C G T A T G C C G T A A G T C A C G T C T G A C T G A G A C T A C T G A C T G A C G T
A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G